Michael Seringhaus
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JUMP TO opinion & commentary - peer-reviewed articles - reviews - science news - book reviews - fiction - comics - fun stuff


OPINION & COMMENTARY(looking for my column?)

Law Schools Shouldn't Grub For Rankings by Michael Seringhaus. The Hartford Courant. Page A9. April 2, 2008.
Carried on the Los Angeles Times-Washington Post newswire.
Accompanying interview on the Wall Street Journal Law Blog, April 2 2008
Discussed on Above The Law and TaxProf Blog, April 2 2008
Reprinted in the Deseret Morning News (Salt Lake City UT) and the Spokesman-Review (Spokane WA), April 6 2008


Manually structured digital abstracts: A scaffold for automatic text mining by Michael Seringhaus and Mark Gerstein. FEBS Letters. 2008 Mar 6; 582(8):1170.
[pubmed] [pre-print]


Uncovering trends in gene naming by Michael Seringhaus, Philip Cayting and Mark Gerstein. Genome Biology. 2008 Jan 31;9(1):401.
[pubmed] [full text] [PDF]


Structured digital abstract makes text mining easy by Mark Gerstein, Michael Seringhaus and Stan Fields. Nature. 2007 May 10;447(7141):142.
[pubmed] [full text] [PDF]


Publishing perishing? Towards tomorrow's information architecture by Michael Seringhaus and Mark Gerstein. BMC Bioinformatics. 2007 Jan 19; 8(1):17.
[pubmed] [abstract] [free full text] [PDF] open access


Chemistry Nobel Rich in Structure by Michael Seringhaus and Mark Gerstein. Science. Vol. 315. no. 5808, pp. 40-41 (5 January 2007).
[full text]


The Death of the Scientific Paper by Michael Seringhaus and Mark Gerstein. The Scientist. Volume 20, Issue 9, Page 25 (September 2006).


Open Access Revisited by Michael Seringhaus. The New Criterion. Volume 23 (Summer 2005).


Open Access: The Quiet Revolution in Scientific Publishing by Michael Seringhaus. B Magazine (Yale BBS). November, 2004.


Scientists, consider where you publish by Michael Seringhaus. Yale Daily News. September 8, 2004.
Reprinted in Neurobiology of Lipids 3:10, November 2, 2004. [PDF] open access


What Price Knowledge? by Michael Seringhaus. The New Criterion. Volume 22 (Summer 2004).




AR Borneman, TA Gianoulis, ZD Zhang, H Yu, J Rozowsky, M Seringhaus, LY Wang, M Gerstein, M Snyder. Divergence of transcription factor binding sites across related yeast species. Science. 2007 Aug 10;317(5839):815-9.
[pubmed] [full text] [PDF]


AR Borneman, ZD Zhang, J Rozowsky, M Seringhaus, M Gerstein, M Snyder. Transcription factor binding site identification in yeast: a comparison of high-density oligonucleotide and PCR-based microarray platforms. Funct Integr Genomics. 2007 Oct;7(4):335-45. Epub 2007 Jul 19.
[pubmed] [full text] [PDF]


ENCODE Project Consortium. Identification and analysis of functional elements in 1% of the human genome by the ENCODE pilot project.
Nature. 2007 Jun 14;447(7146):799-816.
[pubmed] [full text] [free full text @ PMC] [PDF]


T Srikantha, AR Borneman, KJ Daniels, C Pujol, W Wu, M Seringhaus, M Gerstein, S Yi, M Snyder, DR Soll. TOS9 Regulates White-Opaque Switching in Candida albicans. Eukaryotic Cell. 2006 Oct;5(10):1674-87. Epub 2006 Sep 1.
[pubmed] [abstract] [full text] [PDF]


M Seringhaus, A Paccanaro, A Borneman, M Snyder, M Gerstein. Predicting Essential Genes in Fungal Genomes. Genome Research. 16:1126-1135, 2006.
[pubmed] [abstract] [free full text] [PDF] open access


M Seringhaus, A Kumar, J Hartigan, M Snyder, M Gerstein. Genomic analysis of insertion behavior and target specificity of mini-Tn7 and Tn3 transposons in Saccharomyces cerevisiae. Nucleic Acids Research 2006 34(8):e57: 1-12.
[pubmed] [abstract] [free full text] [PDF] open access


A Kumar, M Seringhaus, MC Biery, RJ Sarnovsky, L Umansky, S Piccirillo, M Heidtman, KH Cheung, CJ Dobry, MB Gerstein, NL Craig, M Snyder. Large-Scale Mutagenesis of the Yeast Genome Using a Tn7-Derived Multipurpose Transposon. Genome Research. 2004;14: 1975-1986.
[pubmed] [abstract] [PDF]


Y Xia, H Yu, R Jansen, M Seringhaus, S Baxter, D Greenbaum, H Zhao, M Gerstein. Analyzing cellular biochemistry in terms of molecular networks. Annual Reviews of Biochemistry. 2004;73:1051-87.
[pubmed] [abstract] [full text] [PDF]


KH Cheung, D Pan, A Smith, M Seringhaus, SM Douglas, M Gerstein. An XML-Based Approach to Integrating Heterogeneous Yeast Genome Data (2004) 2004 International Conference on Mathematics and Engineering Techniques in Medicine and Biological Sciences.




CE Mason, M Seringhaus, C Sattler de Sousa e Brito. Personalized genomic medicine on a patchwork, partially-owned genome. Yale Journal of Biology and Medicine. Dec 2007, (in press).
[pubmed] [full text] [PDF] open access




Essentially Conserved: Understanding Essential Genes. Drug Discovery Today, 9;1:45. January 2004.




Developing Bioinformatics Computer Skills (Gibas & Jambeck 2001) Yale Journal of Biology and Medicine, 2002; 75:2



Beginning Perl for Bioinformatics (Tisdall 2001) Yale Journal of Biology and Medicine, 2002; 75:4



A Dictionary of Genetics (6th Ed., King & Stansfield 2002) Yale Journal of Biology and Medicine, 2002; 75:4



Operators and Promoters: The Story of Molecular Biology and its Creators (Echols 2001) Yale Journal of Biology and Medicine, 2002; 75:5




Winston Price Stories


The Curious Matter of the Crawling Ruby Vine. (2006)


The Affair of the Ashen Tycoon. In Posse Review, (2003).



The Case of the Wayward Brougham. Trinity Review, University of Toronto (Fall 1999)



The Adventure of the Half-Witted Shopkeep. The Jupiter (February 1999)



The Case of the Barthoff Diamond. The Jupiter (February 1999)




YTR - ya thats rite appeared weekly in The Yale Herald, January-May 2005.




Lyse, Lyse Baby. (My cover of Vanilla Ice's "Ice, Ice Baby")


Sex Advice from Scientists. (Interview for Nerve.com, April 2006)



© 2002-2008